
   18-Nov-2019 17:05:24 +0100

rootdir = ../191030_GeraldDoreenBob_Bats3
sampleName = Bat4_8nlps_RT
measNums = 10 1 2 3 4 5 6 7 8 9 
frameNums = 3000 3000 3000 3000 3000 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.1
Converting 'M10_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 932 cell sequences
cell traces covers the whole channel: 348 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 265
write results (83 cells):
----------
----------
83 cells written
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 843 cell sequences
cell traces covers the whole channel: 566 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 422
write results (144 cells):
----------
----------
144 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1170 cell sequences
cell traces covers the whole channel: 594 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 442
write results (152 cells):
----------
----------
152 cells written
Converting 'M3_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1062 cell sequences
cell traces covers the whole channel: 456 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 345
write results (111 cells):
----------
----------
111 cells written
Converting 'M4_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1108 cell sequences
cell traces covers the whole channel: 468 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 367
write results (101 cells):
----------
----------
101 cells written
Converting 'M5_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1023 cell sequences
cell traces covers the whole channel: 474 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 358
write results (116 cells):
----------
----------
116 cells written
Converting 'M6_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1064 cell sequences
cell traces covers the whole channel: 434 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 339
write results (95 cells):
----------
----------
95 cells written
Converting 'M7_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 924 cell sequences
cell traces covers the whole channel: 359 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 282
write results (77 cells):
----------
----------
77 cells written
Converting 'M8_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 979 cell sequences
cell traces covers the whole channel: 400 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
{Operation terminated by user during <a href="matlab:matlab.internal.language.introspective.errorDocCallback('polygeom', '/media/bob/HikeBob4TB/02_dRT-DC-Experiments/00_analysis/polygeom.m', 54)" style="font-weight:bold">polygeom</a> (<a href="matlab: opentoline('/media/bob/HikeBob4TB/02_dRT-DC-Experiments/00_analysis/polygeom.m',54,0)">line 54</a>)


In <a href="matlab:matlab.internal.language.introspective.errorDocCallback('calcVolumeSurfacearea', '/media/bob/HikeBob4TB/02_dRT-DC-Experiments/00_analysis/calcVolumeSurfacearea.m', 3)" style="font-weight:bold">calcVolumeSurfacearea</a> (<a href="matlab: opentoline('/media/bob/HikeBob4TB/02_dRT-DC-Experiments/00_analysis/calcVolumeSurfacearea.m',3,0)">line 3</a>)
[ geom, ~, ~ ] = polygeom( contour(:,1), contour(:,2) );

In <a href="matlab:matlab.internal.language.introspective.errorDocCallback('CellPosDeformEval40', '/media/bob/HikeBob4TB/02_dRT-DC-Experiments/00_analysis/CellPosDeformEval40.m', 175)" style="font-weight:bold">CellPosDeformEval40</a> (<a href="matlab: opentoline('/media/bob/HikeBob4TB/02_dRT-DC-Experiments/00_analysis/CellPosDeformEval40.m',175,0)">line 175</a>)
        [vVolume(l), vSurfaceArea(l)] =
        calcVolumeSurfacearea(contourData(framePos(1):framePos(1)+framePos(2)-1,:));} 
CellPosDeformEval40

   18-Nov-2019 17:42:17 +0100

rootdir = ../191030_GeraldDoreenBob_Bats3
sampleName = Bat4_8nlps_RT
measNums = 10 1 2 3 4 5 6 7 8 9 
frameNums = 3000 3000 3000 3000 3000 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M10_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 932 cell sequences
cell traces covers the whole channel: 348 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 14
write results (334 cells):
----------
----------
334 cells written
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 843 cell sequences
cell traces covers the whole channel: 566 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 18
write results (548 cells):
----------
----------
548 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1170 cell sequences
cell traces covers the whole channel: 594 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 18
write results (576 cells):
----------
----------
576 cells written
Converting 'M3_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1062 cell sequences
cell traces covers the whole channel: 456 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 19
write results (437 cells):
----------
----------
437 cells written
Converting 'M4_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1108 cell sequences
cell traces covers the whole channel: 468 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 13
write results (455 cells):
----------
----------
455 cells written
Converting 'M5_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1023 cell sequences
cell traces covers the whole channel: 474 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 27
write results (447 cells):
----------
----------
447 cells written
Converting 'M6_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1064 cell sequences
cell traces covers the whole channel: 434 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 16
write results (418 cells):
----------
----------
418 cells written
Converting 'M7_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 924 cell sequences
cell traces covers the whole channel: 359 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 9
write results (350 cells):
----------
----------
350 cells written
Converting 'M8_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 979 cell sequences
cell traces covers the whole channel: 400 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 21
write results (379 cells):
----------
----------
379 cells written
Converting 'M9_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 925 cell sequences
cell traces covers the whole channel: 386 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 11
write results (375 cells):
----------
----------
375 cells written
measurement: ../191030_GeraldDoreenBob_Bats3/Bat4_8nlps_RT/Online/
cell counts:
M#	Th	wholeChannel	areaRatio	written
10	932	348	334	334
1	843	566	548	548
2	1170	594	576	576
3	1062	456	437	437
4	1108	468	455	455
5	1023	474	447	447
6	1064	434	418	418
7	924	359	350	350
8	979	400	379	379
9	925	386	375	375

   9-Mar-2022 18:41:42 +0100

rootdir = ..\191030_GeraldDoreenBob_Bats3\
sampleName = 191030_Bat4_8nlps_RT
measNums = 10 1 2 3 4 5 6 7 8 9 
frameNums = 3000 3000 3000 3000 3000 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M10_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 932 cell sequences
cell traces covers the whole channel: 348 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 14
write results (334 cells):
----------
----------
334 cells written
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 843 cell sequences
cell traces covers the whole channel: 566 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 18
write results (548 cells):
----------
----------
548 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1170 cell sequences
cell traces covers the whole channel: 594 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 18
write results (576 cells):
----------
----------
576 cells written
Converting 'M3_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1062 cell sequences
cell traces covers the whole channel: 456 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 19
write results (437 cells):
----------
----------
437 cells written
Converting 'M4_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1108 cell sequences
cell traces covers the whole channel: 468 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 13
write results (455 cells):
----------
----------
455 cells written
Converting 'M5_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1023 cell sequences
cell traces covers the whole channel: 474 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 27
write results (447 cells):
----------
----------
447 cells written
Converting 'M6_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1064 cell sequences
cell traces covers the whole channel: 434 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 16
write results (418 cells):
----------
----------
418 cells written
Converting 'M7_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 924 cell sequences
cell traces covers the whole channel: 359 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 9
write results (350 cells):
----------
----------
350 cells written
Converting 'M8_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 979 cell sequences
cell traces covers the whole channel: 400 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 21
write results (379 cells):
----------
----------
379 cells written
Converting 'M9_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 925 cell sequences
cell traces covers the whole channel: 386 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 11
write results (375 cells):
----------
----------
375 cells written
measurement: ..\191030_GeraldDoreenBob_Bats3\191030_Bat4_8nlps_RT\Online\
cell counts:
M#	Th	wholeChannel	areaRatio	written
10	932	348	334	334
1	843	566	548	548
2	1170	594	576	576
3	1062	456	437	437
4	1108	468	455	455
5	1023	474	447	447
6	1064	434	418	418
7	924	359	350	350
8	979	400	379	379
9	925	386	375	375
